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Potential energy functions
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NAMD 2.9 User's Guide
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Example of a Session
Contents
Index
Force Field Parameters
Subsections
Potential energy functions
Bonded potential energy terms
Nonbonded potential energy terms
Non-bonded interactions
Van der Waals interactions
Electrostatic interactions
Non-bonded force field parameters
PME parameters
Full direct parameters
Tabulated nonbonded interaction parameters
Water Models
Drude polarizable force field
Required input files
Standard output
Drude force field parameters
MARTINI Residue-Based Coarse-Grain Forcefield
Constraints and Restraints
Bond constraint parameters
Harmonic restraint parameters
Fixed atoms parameters
Extra bond, angle, and dihedral restraints
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