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  Contents
- 1
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M. P. Allen and D. J. Tildesley.
Computer Simulation of Liquids.
Oxford University Press, New York, 1987.
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F. C. Bernstein, T. F. Koetzle, G. J. B. Williams, J. E. F. Meyer, M. D. Brice,
J. R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi.
The protein data bank: A computer-based archival file for
macromolecular structures.
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J. Board, Z. Hakura, W. Elliot, and W. Rankin.
Scalable variants of multipole-accelerated algorithms for molecular
dynamics applications.
Technical Report TR94-006, Duke University, Dept. of Elec. Engr.,
1994.
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B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan,
and M. Karplus.
CHARMM: a program for macromolecular energy, minimization, and
dynamics calculations.
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A. T. Brünger.
X-PLOR, Version 3.1, A System for X-ray Crystallography and
NMR.
The Howard Hughes Medical Institute and Department of Molecular
Biophysics and Biochemistry, Yale University, 1992.
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W. Humphrey and A. Dalke.
VMD user guide (Version 0.94).
Beckman Institute Technical Report TB-94-07, University of Illinois,
1994.
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J. A. McCammon and S. C. Harvey.
Dynamics of Proteins and Nucleic Acids.
Cambridge University Press, Cambridge, 1987.
namd@ks.uiuc.edu