NAMD User's Guide



Version 2.11






M. Bhandarkar, A. Bhatele, E. Bohm, R. Brunner, F. Buelens, C. Chipot, A. Dalke, S. Dixit, G. Fiorin, P. Freddolino, P. Grayson, J. Gullingsrud, A. Gursoy, D. Hardy, C. Harrison, J. Hénin, W. Humphrey, D. Hurwitz, A. Hynninen, N. Jain, N. Krawetz, S. Kumar, D. Kunzman, J. Lai, C. Lee, R. McGreevy, C. Mei, M. Nelson, J. Phillips, B. Radak, O. Sarood, A. Shinozaki, D. Tanner, D. Wells, G. Zheng, F. Zhu


December 21, 2015






Theoretical Biophysics Group
University of Illinois and Beckman Institute
405 N. Mathews
Urbana, IL 61801

Description

The NAMD User's Guide describes how to run and use the various features of the molecular dynamics program NAMD. This guide includes the capabilities of the program, how to use these capabilities, the necessary input files and formats, and how to run the program both on uniprocessor machines and in parallel.

NAMD Version 2.11

Authors: M. Bhandarkar, A. Bhatele, E. Bohm, R. Brunner, F. Buelens, C. Chipot, A. Dalke, S. Dixit, G. Fiorin, P. Freddolino, P. Grayson, J. Gullingsrud, A. Gursoy, D. Hardy, C. Harrison, J. Hénin, W. Humphrey, D. Hurwitz, A. Hynninen, N. Jain, N. Krawetz, S. Kumar, D. Kunzman, J. Lai, C. Lee, R. McGreevy, C. Mei, M. Nelson, J. Phillips, B. Radak, O. Sarood, A. Shinozaki, D. Tanner, D. Wells, G. Zheng, F. Zhu

Theoretical and Computational Biophysics Group, Beckman Institute, University of Illinois.

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