next up previous contents
Next: About this document ... Up: NAMD User Guide Previous: Conversion factors

Bibliography

1
M. P. Allen and D. J. Tildesley.
Computer Simulation of Liquids.
Oxford University Press, New York, 1987.

2
F. C. Bernstein, T. F. Koetzle, G. J. B. Williams, J. E. F. Meyer, M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi.
The protein data bank: A computer-based archival file for macromolecular structures.
J. Mol. Biol., 112:535-542, 1977.

3
J. J. Biesiadecki and R. D. Skeel.
Dangers of multiple-time-step methods.
J. Comput. Phys., 109(2):318-328, 1993.

4
J. Board, Z. Hakura, W. Elliot, and W. Rankin.
Scalable variants of multipole-accelerated algorithms for molecular dynamics applications.
Technical Report TR94-006, Duke University, Dept. of Elec. Engr., 1994.

5
B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus.
Charmm: A program for macromolecular energy, minimization, and dynamics calculations.
J. Comp. Chem., 4(2):187-217, 1983.

6
A. T. Brünger.
X-PLOR, Version 3.1, A System for X-ray Crystallography and NMR.
The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, 1992.

7
D. D. Humphreys, R. A. Friesner, and B. J. Berne.
A multiple-time-step molecular dynamics algorithm for macromolecules.
J. Phys. Chem., 98:6885-6892, 1994.

8
J. A. McCammon and S. C. Harvey.
Dynamics of Proteins and Nucleic Acids.
Cambridge University Press, Cambridge, 1987.



David Hardy
1998-09-06