ProDy 1.5 Series¶
1.5 (Dec 23, 2013)¶
New Features:
buildDirectInfoMatrix()
andcalcMeff()
are implemented for calculation of direct information from multiple sequence alignments.showDirectInfoMatrix()
andshowSCAMatrix()
functions are implemented for displaying coevolutionary data.RTB
is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit imANM calculations.
Availability:
- Source is moved from
lib/prody
toprody
.- Source code will be hosted only at GitHub.
Improvements:
DCDFile
andparseDCD()
support DCD files written by cpptraj.
Testing:
- ProDy test command (prody test) and function
prody.test()
has been removed for easier maintenance of testing functions. See Testing ProDy for more information on how to test ProDy.